PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011298
Common NameLOC102585456
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 442aa    MW: 48254.5 Da    PI: 6.3589
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011298genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-20207256255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aaka++ a+++++g
  PGSC0003DMP400011298 207 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAKAYDDAALRFRG 256
                           7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-32207265IPR001471AP2/ERF domain
CDDcd000184.49E-21207266No hitNo description
PfamPF008471.8E-13207256IPR001471AP2/ERF domain
SMARTSM003804.2E-36207270IPR001471AP2/ERF domain
PROSITE profilePS5103225.475207264IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-22207265IPR016177DNA-binding domain
PRINTSPR003672.1E-11208219IPR001471AP2/ERF domain
PRINTSPR003672.1E-11230246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MWLLKVANQG DSGEHDRNLS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS  60
ESANPMYTGY SQSRDMSEMV TALTHVVSGR REGEWGYRPD ISGVTTSFVG GGGGSGSIYS  120
ANSPSSSSSG SWAGQKRRRD QEESVTGERG YGGIREFKNG EPSSSVKPEE DTSLAAPQTS  180
SVSTTAAQTP PQPAEVTGEE TGERKRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA  240
EAAAKAYDDA ALRFRGNRAK LNFPENVRLL PQQQPTTRLA ISTTAPAPAA SRFQLMSAAS  300
MRSPSPFFQS HNQPPHQPQQ QQLFQSSDMA RDYWEYSQLL QNPIDFHGGQ QSSSLLEQML  360
LASSLGVLHS HTFPSSSSSS LATSAASSTT SPAYPLFYSA QQSRFFQPQT HQNQSNSSSS  420
SSSNFPPPFW TSSGHYPPSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22206267163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363442.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLM1A7F40.0M1A7F4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000163060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-29ethylene response factor 110
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]