PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011269
Common NameLOC102606191
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 729aa    MW: 82103.7 Da    PI: 5.3259
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011269genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.72.6e-1183567252374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++ L+ cA+av+++d + a+++L+++++++sp+gd mqR+a+yf+++L+ar+a+s++++y  + + +ts    ++ l+a++lf  ++P+
  PGSC0003DMP400011269 356 RTILTLCAQAVAADDRRTANEFLKQIRQNSSPTGDGMQRVAHYFANGLEARMAGSGTQIYTDFISMPTS---AANILKAYQLFLAACPF 441
                           67899*********************************************************9999998...899************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                            k+ ++  N++I++ +e++++vHiiDf+i++G+QWp+++q L+ Rp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfe
  PGSC0003DMP400011269 442 RKLFNFFSNKTIMNVAETASTVHIIDFGIMYGFQWPCFIQRLSRRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLADYAESFNVPFE 530
                           **************************************************************9************************** PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f + +a+++e++++e+L+++++E+laVn++++  +llde+v ++s+rd vL+l+++l+P+v v    +  +n++ F +rf eal +ys+
  PGSC0003DMP400011269 531 FIA-IAQKWETIKVEDLKIQKDEVLAVNCMYRFRNLLDETVVVNSPRDIVLNLIRKLNPDVYVQGIVNGAYNAPFFITRFREALFHYSS 618
                           ***.7************************************************************************************ PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           +fd+lea++pre  er  vE+ ++gre++nvvace aer+er et+++W+ r  +aGF+++pl+e++   ak  ++ +++d + ++ + 
  PGSC0003DMP400011269 619 VFDMLEANIPREIPERLLVEKLIFGREAMNVVACEAAERIERPETYKQWQVRNIRAGFRQLPLNEEILRVAKDRVKAYHKD-FVIDVDG 706
                           *******************************************************************************77.******* PP

                  GRAS 356 gslvlgWkdrpLvsvSaWr 374
                           ++l++gWk+r ++++S W+
  PGSC0003DMP400011269 707 KWLLQGWKGRIMYAASTWK 725
                           ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.07329706IPR005202Transcription factor GRAS
PfamPF035149.1E-116356725IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MVMDSRNYKG LYDATSGIQL KDDDDDKPFF QDLNLINHLR VSDALVERNL EPVDFVPSAM  60
DNCHEDYDFS DVVLKYISQM LMEENIEEKT CMFQESAALQ AAERSFYEVI GEKYPPSPIL  120
DLGQDGRCGV DSSSNNYYSC GSDITDGLLC PNWNPDLGDV DSSHTQQFVI DSGTSQSSLS  180
SPSSSGTVTD AHVDSPVSSI QIPDIFSDSE SIMQFKKGVE EASKFLPTGN SLLLDVRYDV  240
VVKEDNENGK DAVENRGKQK SPEGSRGKKN IHHDDVDVME ERSNKQSAVF YESTVRSDLF  300
DKVLLCSGGK NESALRESWQ VVSSKHAPEN VLPKGSNSRK SRGKKQGGKR DAVDLRTILT  360
LCAQAVAADD RRTANEFLKQ IRQNSSPTGD GMQRVAHYFA NGLEARMAGS GTQIYTDFIS  420
MPTSAANILK AYQLFLAACP FRKLFNFFSN KTIMNVAETA STVHIIDFGI MYGFQWPCFI  480
QRLSRRPGGP PKLRITGIDF PNPGFRPAER VEETGRRLAD YAESFNVPFE FIAIAQKWET  540
IKVEDLKIQK DEVLAVNCMY RFRNLLDETV VVNSPRDIVL NLIRKLNPDV YVQGIVNGAY  600
NAPFFITRFR EALFHYSSVF DMLEANIPRE IPERLLVEKL IFGREAMNVV ACEAAERIER  660
PETYKQWQVR NIRAGFRQLP LNEEILRVAK DRVKAYHKDF VIDVDGKWLL QGWKGRIMYA  720
ASTWKGSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-543397243378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011269
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346712.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM1A7D30.0M1A7D3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000162580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]