PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011227
Common NameLOC102600080
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 290aa    MW: 30656.7 Da    PI: 9.6274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011227genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-06101122627
                           -SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                           C+ f     C++Gd+C+FaHg+
  PGSC0003DMP400011227 101 CSKFNTAEGCRFGDKCHFAHGE 122
                           888999899***********96 PP
2zf-CCCH29.81e-09257280226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           kt+ C +f++ G C +G++C+FaHg
  PGSC0003DMP400011227 257 KTKMCANFSK-GLCTFGEKCHFAHG 280
                           89********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9623462IPR000571Zinc finger, CCCH-type
SMARTSM003561.93461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-53562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-63659IPR000571Zinc finger, CCCH-type
PfamPF146080.894259No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-1194124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-795125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.43695123IPR000571Zinc finger, CCCH-type
SMARTSM003560.08397122IPR000571Zinc finger, CCCH-type
PfamPF146080.018101121No hitNo description
SuperFamilySSF547919.06E-15160235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.7E-15163233IPR004088K Homology domain, type 1
SMARTSM003221.2E-10163233IPR004087K Homology domain
PROSITE profilePS5008413.607164228IPR004088K Homology domain, type 1
PfamPF000131.2E-10166230IPR004088K Homology domain, type 1
CDDcd001051.73E-13166228No hitNo description
PROSITE profilePS5010315.197255282IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018255281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-13256287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-8256285IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6257280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEFGRKRRVG GAFGSSGGMK KSRDESESFT TGVGSKSKPC MKFYSTSGCS FGAGCHFLHY  60
VPGYTAMSQL SNMGSNPAPP FGRNSASFSD GPGPAVKSKF CSKFNTAEGC RFGDKCHFAH  120
GEMEIGKQVR PAYDDFQAKG PPSGFSGYLE PSQPGLAATN FGASATTTIS IDASLAGNII  180
GKSGVNSKHI CRVTGVKLFI KEHETDTNKR NVELQGTFDQ INQASAMVRE LISNISTPTG  240
GLKKAAPFTR DPPGPLKTKM CANFSKGLCT FGEKCHFAHG ASELQKPLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011227
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359166.10.0PREDICTED: zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R04e-91C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1A7930.0M1A793_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-66C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]