PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400011226 | ||||||||
Common Name | LOC102600080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 218aa MW: 22972 Da PI: 9.1295 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2.1e-06 | 29 | 50 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f C++Gd+C+FaHg+ PGSC0003DMP400011226 29 CSKFNTAEGCRFGDKCHFAHGE 50 888999999***********96 PP | |||||||
2 | zf-CCCH | 30.4 | 6.8e-10 | 185 | 208 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+ C +f++ G C +G++C+FaHg PGSC0003DMP400011226 185 KTKMCANFSK-GLCTFGEKCHFAHG 208 89********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-11 | 22 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.436 | 23 | 51 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 23 | 53 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.083 | 25 | 50 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.013 | 29 | 49 | No hit | No description |
SuperFamily | SSF54791 | 4.97E-15 | 88 | 163 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.6E-15 | 91 | 161 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.2E-10 | 91 | 161 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.607 | 92 | 156 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 6.03E-14 | 94 | 156 | No hit | No description |
Pfam | PF00013 | 6.9E-11 | 94 | 158 | IPR004088 | K Homology domain, type 1 |
SMART | SM00356 | 0.0018 | 183 | 209 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 183 | 210 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 184 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-14 | 184 | 215 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-6 | 185 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MGSNPAPPFG RNSASFSDGP GPAVKSKFCS KFNTAEGCRF GDKCHFAHGE MEIGKQVRPA 60 YDDFQAKGPP SGFSGYLEPS QPGLAATNFG ASATTTISID ASLAGNIIGK SGVNSKHICR 120 VTGVKLFIKE HETDTNKRNV ELQGTFDQIN QASAMVRELI SNISTPTGGL KKAAPFTRDP 180 PGPLKTKMCA NFSKGLCTFG EKCHFAHGAS ELQKPLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400011226 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359166.1 | 1e-159 | PREDICTED: zinc finger CCCH domain-containing protein 31-like | ||||
Swissprot | Q7F8R0 | 2e-62 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | M1A792 | 1e-158 | M1A792_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1A793 | 1e-157 | M1A793_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400016195 | 1e-158 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-51 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400011226 |
Entrez Gene | 102600080 |
Publications ? help Back to Top | |||
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