PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400011195 | ||||||||
Common Name | LOC102598883 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 374aa MW: 40844.5 Da PI: 7.4201 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 9.1e-18 | 197 | 251 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k PGSC0003DMP400011195 197 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTK 251 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.7 | 9.9e-41 | 197 | 287 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++ LEesF+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr PGSC0003DMP400011195 197 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLHKELQELR- 284 69*************************************************************************************9. PP HD-ZIP_I/II 90 elk 92 +lk PGSC0003DMP400011195 285 ALK 287 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-18 | 171 | 254 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.37E-18 | 184 | 254 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.184 | 193 | 253 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-15 | 195 | 257 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.24E-15 | 197 | 254 | No hit | No description |
Pfam | PF00046 | 4.2E-15 | 197 | 251 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 228 | 251 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.0E-11 | 253 | 287 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.3E-26 | 253 | 296 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MELGLSLGDA KTNNTTNSSP KSFFLCKKNV ISTCNDHEKK KSLGFCMALG INSSSERVEQ 60 DEDDEENNTS EEGTNNTLPV QLDLLPLVPV PLPPTNNLPQ SLHWSSDNGS SENVSSGNGG 120 LPAARGFDVN RLPAAGMDEV SSPNSVASSF RMDFGLFKSC VNIIGVGNKR NSESAGGEPE 180 RASSRASDDD ENGANTRKKL RLSKEQSAYL EESFKEHHTL NPKQKLALAK QLSLRPRQVE 240 VWFQNRRART KLKQTEVDCE YLKRCCETLT DENRRLHKEL QELRALKTSN PFYMQLPATT 300 LTMCPSCERV ASTTTTTSAA TAPPITAATA TATTTTTSDS IPKAIPFLNS RPRFFPFTTT 360 NNNPNHSHQS AAS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 201 | TRKKLRL |
2 | 245 | 253 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400011195 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-163 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359162.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | Q6YPD0 | 5e-88 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | M1A765 | 0.0 | M1A765_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400016146 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-75 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400011195 |
Entrez Gene | 102598883 |
Publications ? help Back to Top | |||
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