PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010871
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 536aa    MW: 59558.6 Da    PI: 6.1597
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010871genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.31.3e-1371655351374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l+++L++cA+avs+g+l  aq l+++l++++s +g+p+qRl ay++e+L arl  s+s+++k+l+++e +   s e l+++++++e++P
  PGSC0003DMP400010871 165 LKQVLIACAKAVSDGELVTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLGASGSSICKSLRCKEPA---SFELLSYMHVLYEICP 250
                           5799*****************************************************************9...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           ++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++++qa+a+Rp+gpp++RiTg+++++s   +   l  +g+rL+k+A++++vpf
  PGSC0003DMP400010871 251 YFKFGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWVPMIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLDIVGQRLSKLAKTFKVPF 339
                           ************************************************************998899999******************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ef++ +a + +d++l++L ++pgEalaVn+++ lh+++desvs+e++rd++L++vk+l+Pkvv++veqe+++n++ F+ rfle+l+yys
  PGSC0003DMP400010871 340 EFHP-AAMSGSDVQLKNLGIQPGEALAVNFAFTLHHMPDESVSTENHRDRLLRMVKNLNPKVVTLVEQESNTNTAAFFPRFLETLDYYS 427
                           ****.899********************************************************************************* PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+f+s++++l+r ++eri+vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ +++  yr+ee+
  PGSC0003DMP400010871 428 AMFESIDMTLSRGHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFNPYPLSSLVNATIKTLLESYSD-KYRLEER 515
                           ********************************************************************************5.5****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +g+l+lgW++r Lv+ +aW+
  PGSC0003DMP400010871 516 DGALYLGWMNRDLVASCAWK 535
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.927139516IPR005202Transcription factor GRAS
PfamPF035144.3E-135165535IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSNTLYCEPV QKAEAYCLPR FQTLESHLSY INGSLGGNHS FQTYRDRYCM LEASSATGSY  60
GVYHSPSTAS FSSNGSTTCN QESQPYLSDI RQSPETTNYG SPISGSCITD DATDFMHKLK  120
ELETVMLGPD ADFQESYDNS LASSIASSEI DSWRQMMLAI PRRDLKQVLI ACAKAVSDGE  180
LVTAQVLISE LRQMVSVSGE PIQRLGAYIL EGLVARLGAS GSSICKSLRC KEPASFELLS  240
YMHVLYEICP YFKFGYMSAN GAIAEAMKDE NRVHIIDFQI AQGSQWVPMI QAFAARPGGP  300
PHIRITGIDD STSAYARGGG LDIVGQRLSK LAKTFKVPFE FHPAAMSGSD VQLKNLGIQP  360
GEALAVNFAF TLHHMPDESV STENHRDRLL RMVKNLNPKV VTLVEQESNT NTAAFFPRFL  420
ETLDYYSAMF ESIDMTLSRG HKERINVEQH CLARDVVNII ACEGIERVER HELLGKWKSR  480
FRMAGFNPYP LSSLVNATIK TLLESYSDKY RLEERDGALY LGWMNRDLVA SCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-611675356375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010871
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363022.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_015158751.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLM1A6E90.0M1A6E9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000156960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]