PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400010653 | ||||||||
Common Name | LOC102588413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 22928.5 Da PI: 10.0452 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 7.9e-12 | 48 | 94 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++ErrRR ri +++ L el+P++ K + a++L +A+++I+ Lq PGSC0003DMP400010653 48 MHKMNERRRRYRIAKKMKVLEELIPNC-----NKSNRASVLDQAIQHIQALQ 94 7*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.02E-11 | 42 | 98 | No hit | No description |
SuperFamily | SSF47459 | 9.68E-16 | 42 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.227 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-15 | 48 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 48 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MLKGEVYLLA RFGGCYVAEI ETNNGIGITS RRNEDGFHQY TKTSCVEMHK MNERRRRYRI 60 AKKMKVLEEL IPNCNKSNRA SVLDQAIQHI QALQHQVQVM SMDRIRASTL VAAGRNQIMQ 120 STLHFNPYVP IMPRIGAIGY FFGFGKSFTY SNMYCSNFSP MLSTGGQFPF LPLSDANNLL 180 HPVPIMEAFT RGSASVAPPE KRA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 57 | ERRRRY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400010653 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-50 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170292.1 | 1e-152 | PREDICTED: transcription factor PIF5-like isoform X4 | ||||
TrEMBL | M1A5X8 | 1e-151 | M1A5X8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400015377 | 1e-152 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15248 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-11 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400010653 |
Entrez Gene | 102588413 |
Publications ? help Back to Top | |||
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