PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010497
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 503aa    MW: 54999.2 Da    PI: 5.6657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010497genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-183784148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
  PGSC0003DMP400010497 37 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 84
                          79******************************************9986 PP
2Myb_DNA-binding49.41.1e-1590133146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g++T+eE+  ++++++++G++ W++ a++++ gRt++++k++w++
  PGSC0003DMP400010497  90 KGAFTPEEERHIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 133
                           799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9393284IPR017930Myb domain
SuperFamilySSF466892.73E-3034131IPR009057Homeodomain-like
SMARTSM007171.7E-133686IPR001005SANT/Myb domain
PfamPF002493.7E-153784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-243891IPR009057Homeodomain-like
CDDcd001674.53E-113984No hitNo description
PROSITE profilePS5129425.18485139IPR017930Myb domain
SMARTSM007173.6E-1589137IPR001005SANT/Myb domain
PfamPF002497.5E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2592138IPR009057Homeodomain-like
CDDcd001674.03E-1192133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MTSESDDRMT SLDGVDSPSV EEACGGGNTG GGLPLKKGPW TSAEDAILVE YVTKHGEGNW  60
NAVQKHSGLA RCGKSCRLRW ANHLRPDLKK GAFTPEEERH IIELHAKMGN KWARMAAELP  120
GRTDNEIKNY WNTRIKRRQR AGLPIYPSDI CFQSITENKQ NEELGTFSSA DSQYPDFLPM  180
NYEIPAVEFK RLEFNQHLCP PVLLDIPTGG ILDIPGRSLL AQGLNSAYYS RSFLSTTPPA  240
KRIRGSESLF SGLNGDCSPS KNDGSFPTCH QHQDDGSLLA QSMGFSSSFN QNLTSDYHPS  300
SLGVIPGSHA LLNGHTSSSE PSWAKKLELP SLQSPIASWG LLTSPLPSLD SVDTLIQSPP  360
TEHTEPCNLS PRNSGLLDAV LHESQTMRAS KSILHQENSG DVVDNSCPDL HMTEWGQHGD  420
PISPLGHSAA SVFSEYTPTS GSSSEEPQLV TMPACKVKQE KFDYGPYDGK DDASNLISPR  480
PDFLLESNCF GHMQNTVRSI WY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32321381107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010497
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1754750.0EF175475.1 Solanum lycopersicum GAMYB-like2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361138.10.0PREDICTED: transcription factor GAMYB-like isoform X1
SwissprotA2WW876e-98GAM1_ORYSI; Transcription factor GAMYB
TrEMBLM1A5J50.0M1A5J5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000151560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.16e-80myb domain protein 65
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]