PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010389
Common NameLOC102601277
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 457aa    MW: 51791.6 Da    PI: 6.6798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010389genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-12277321554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h e+Er+RR+++N++f  Lr+++P        K++Ka+ L  Av YI++L
  PGSC0003DMP400010389 277 HVEAERKRREKLNHRFYALRSVVPYV-----SKMDKASLLGDAVTYINEL 321
                           899**********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4617184IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.08E-13270326No hitNo description
PROSITE profilePS5088816.463272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17276343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-10277321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-16277334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-15278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MENIISTSST PSQPNTLQKI LQYIIHNRQE WWVYAIFWQA SKDVNNRLIL SWGDGHFRGT  60
KDTIGSAKIG YDQYHQLQKK FGFNGINDTN NNVTDTEWFY MVSMPQCFVA EDELVLRAYT  120
SASHVWLASY YELQLYNCER AKEANLHGIR TIVCISTTSG VVELGSSDII QENWEFVQFI  180
RSLFGSNNNM NTTSHLPVNQ VTLGDHHKVA KCGSPQQEED IIVKQEVAIG NLLSESGNSD  240
FENDDSSTIN NIVNRSIKRA KKGDSSNITR EMAMDVHVEA ERKRREKLNH RFYALRSVVP  300
YVSKMDKASL LGDAVTYINE LKAKIKNLES KLIEPQKKHI LMEQHDSHSA SSTIVTEHGA  360
NNKSLFSSNG ARNGMEIEVK IIGSEGVIRV QSLDMNYPCT RLMNAMKELK FQIYHASISS  420
VKDLMLQDIV IRVPEEFLNE EMLKSAIISK LSVIEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-29151877195Transcription factor MYC3
4rqw_B4e-29151877195Transcription factor MYC3
4rs9_A4e-29151877195Transcription factor MYC3
4yz6_A4e-29151877195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285ERKRRE
2281286RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010389
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352213.10.0PREDICTED: transcription factor bHLH14-like
TrEMBLM1A5990.0M1A599_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000150170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-72bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]