PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010351
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 189aa    MW: 20684 Da    PI: 4.9334
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010351genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.63.1e-082283056
                   AP2 30 rfslgkfgtaeeAakaaiaarkklege 56
                          r++lg+++ ae Aa a+++a+ kl+ge
  PGSC0003DMP400010351  2 RVWLGTYDNAEAAAYAYDRAAYKLRGE 28
                          79***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.683135IPR001471AP2/ERF domain
SMARTSM003806.1E-5241IPR001471AP2/ERF domain
PfamPF008471.7E-4228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-14236IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-11236IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRVWLGTYDN AEAAAYAYDR AAYKLRGEYA RLNFPNLRDP SELGFGDSAK MNALKNSVDA  60
KIQAICQKVK RERAKKGGKK IVESEKKVAK NVDLDSSSCS SSSLVDSESW SHSDVISQSS  120
SDDGFLNSEK SPCSVLGDCP MGPENDNCHV TSITHHFERS VLESEFEDYS LAAMPSFDPE  180
LIWAVLAS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010351
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352251.11e-137PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-31ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLM1A5611e-136M1A561_SOLTU; Uncharacterized protein
TrEMBLM1A5621e-135M1A562_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149531e-136(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.19e-27ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]