PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400010351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 20684 Da PI: 4.9334 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.6 | 3.1e-08 | 2 | 28 | 30 | 56 |
AP2 30 rfslgkfgtaeeAakaaiaarkklege 56 r++lg+++ ae Aa a+++a+ kl+ge PGSC0003DMP400010351 2 RVWLGTYDNAEAAAYAYDRAAYKLRGE 28 79***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.683 | 1 | 35 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-5 | 2 | 41 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-4 | 2 | 28 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-14 | 2 | 36 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-11 | 2 | 36 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MRVWLGTYDN AEAAAYAYDR AAYKLRGEYA RLNFPNLRDP SELGFGDSAK MNALKNSVDA 60 KIQAICQKVK RERAKKGGKK IVESEKKVAK NVDLDSSSCS SSSLVDSESW SHSDVISQSS 120 SDDGFLNSEK SPCSVLGDCP MGPENDNCHV TSITHHFERS VLESEFEDYS LAAMPSFDPE 180 LIWAVLAS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400010351 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352251.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor ERF061-like | ||||
Swissprot | Q9C7W2 | 1e-31 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | M1A561 | 1e-136 | M1A561_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1A562 | 1e-135 | M1A562_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014953 | 1e-136 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 9e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400010351 |
Publications ? help Back to Top | |||
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