PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400010274

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 949aa MW: 103405 Da PI: 6.4152

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400010274	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3e-29	541	592	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PGSC0003DMP400010274 541 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 592 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.643	529	612	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-26	544	592	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.61E-19	852	938	No hit	No description
SMART	SM00666	7.7E-24	853	935	IPR000270	PB1 domain
PROSITE profile	PS51745	21.981	853	935	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.9E-22	853	934	No hit	No description
CDD	cd06407	1.96E-30	854	934	No hit	No description
Pfam	PF00564	9.4E-18	854	934	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
MNFLLVCPCE NGINELNVHH WLGTHNERVI YLPSIFGADT GDIEGTTETV SVNADKGRLP 60 SPISGLIPGD NPDGSCIIKE RMTQALRYLK ESTGERVLAQ VWAPVKEAGR SVLTTSGQPF 120 VLDPECNGLH QYRTVSLMYM FAADGETDGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFPRL 180 DHALHYNVRG TLALPVFEPS GRSCVGVLEL IMTSQKINYA AEVDKVCKAL EAVNLKSSDI 240 LDHPNTQVYV MGYMNQICNE GRQNALVDIL EILTAVCETY KLPLAQTWVP CRHRSVLADG 300 GGLKKSCSSF DGSCMGQICM STTDVAFYVV DAHMWGFRDA CAEHHLQRGQ GVAGRAYASR 360 KSCYCEDITK FCKTEYPLVH YARMFGLTSC FAICLRSSHT ANDDYILEFF LPPNSGDYSD 420 QQALLNSLLL TMKQHFRSLS IASGGELEHD WSSVEIIQAS MEEKIDAKPE SVPTPITSPQ 480 LTSLPNGWMH LDPVGEQQSA VGSNVSKGAR STSGTGEAPN HVSNSDNKTS GKKSERKRGK 540 AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK 600 CVIESVQGAE GAFTLTSLAP NSLPAAVSSI SWPAGANVSN LPSSPSSKPS VFPGEKNEFS 660 HHGTPESHIE AEPSNQMLGG RVARKEEFTP TQNGFLHAEG TRKSRTGSVS REVSAGTPTS 720 HGSCQGSPCA GNEFSPQNEL VNSPAHESCM KVGGSLEAAR QTTTEINLSS AFLMPQPIIP 780 KHTQEPFGGM LVEDAGSSHD LRNLCLPRDA LVDERVPDYN FTIPPVSDAT AKDPVYVPPD 840 AIQQYSAWPE VTSVTIKATY KEDIIRFRLC LNSGTVKLKE EVAKRLKLEL GTIDIKYLDD 900 DLELVPISCD ADLQECVDIS RSSGSSIVRL LIHDIMSNLG SSCESSGK*

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

MNFLLVCPCE NGINELNVHH WLGTHNERVI YLPSIFGADT GDIEGTTETV SVNADKGRLP  60
SPISGLIPGD NPDGSCIIKE RMTQALRYLK ESTGERVLAQ VWAPVKEAGR SVLTTSGQPF  120
VLDPECNGLH QYRTVSLMYM FAADGETDGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFPRL  180
DHALHYNVRG TLALPVFEPS GRSCVGVLEL IMTSQKINYA AEVDKVCKAL EAVNLKSSDI  240
LDHPNTQVYV MGYMNQICNE GRQNALVDIL EILTAVCETY KLPLAQTWVP CRHRSVLADG  300
GGLKKSCSSF DGSCMGQICM STTDVAFYVV DAHMWGFRDA CAEHHLQRGQ GVAGRAYASR  360
KSCYCEDITK FCKTEYPLVH YARMFGLTSC FAICLRSSHT ANDDYILEFF LPPNSGDYSD  420
QQALLNSLLL TMKQHFRSLS IASGGELEHD WSSVEIIQAS MEEKIDAKPE SVPTPITSPQ  480
LTSLPNGWMH LDPVGEQQSA VGSNVSKGAR STSGTGEAPN HVSNSDNKTS GKKSERKRGK  540
AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK  600
CVIESVQGAE GAFTLTSLAP NSLPAAVSSI SWPAGANVSN LPSSPSSKPS VFPGEKNEFS  660
HHGTPESHIE AEPSNQMLGG RVARKEEFTP TQNGFLHAEG TRKSRTGSVS REVSAGTPTS  720
HGSCQGSPCA GNEFSPQNEL VNSPAHESCM KVGGSLEAAR QTTTEINLSS AFLMPQPIIP  780
KHTQEPFGGM LVEDAGSSHD LRNLCLPRDA LVDERVPDYN FTIPPVSDAT AKDPVYVPPD  840
AIQQYSAWPE VTSVTIKATY KEDIIRFRLC LNSGTVKLKE EVAKRLKLEL GTIDIKYLDD  900
DLELVPISCD ADLQECVDIS RSSGSSIVRL LIHDIMSNLG SSCESSGK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400010274

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352238.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1A4Z5	0.0	M1A4Z5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400014837	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400010274

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]