PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400010076

Common Name

BRC1A, STBRC1A

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 337aa MW: 38095.4 Da PI: 9.4407

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400010076	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.5	7.9e-41	104	251	3	136
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasecea 75 kkdrhski T+ g+RdRR+Rls+e+a++fF Lqd LGfdk+skt+eWLl+++k a+ +l++ ss++++ce PGSC0003DMP400010076 104 SKKDRHSKINTAHGPRDRRMRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNDLVQKiskgkcsastnpnigvVSSPSESCEV 192 79***********************************************************88877766555555553333345533 PP TCP 76 esssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 s + +s+ + ++ +++k+kks ++a + +akesr +arararert+ k++++n++ PGSC0003DMP400010076 193 ISGVIDESAAT--NNTHKQQKKKKSIRRAIFHPVVAKESRTEARARARERTKIKKSLNNNN 251 33333333222..222222344444444445688999*************999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-43	104	245	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.256	105	163	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.331	227	244	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MYPSSPNISS SSSFFHINIP SPSMQYEPEF IQYFHDFQFI QPAAYDQNNL DTNITAEEGD 60 HKMEEDELIM KSCKNKKDES TSTTTTIRRK NNKRTTSGTG VGPSKKDRHS KINTAHGPRD 120 RRMRLSLEIA RKFFNLQDLL GFDKASKTVE WLLTKSKSAV NDLVQKISKG KCSASTNPNI 180 GVVSSPSESC EVISGVIDES AATNNTHKQQ KKKKSIRRAI FHPVVAKESR TEARARARER 240 TKIKKSLNNN NGDQSMAPDE DLTRSLGSWS TTFEDHQSGI QAYNNTNNIM NAVDNFNLVD 300 TSNWSPFMFN YHQINTEISQ EHQLTNFQYP GKLWEA*

Function -- GeneRIF ? help Back to Top
A Recently Evolved Alternative Splice Site in the BRANCHED1a Gene Controls Potato Plant Architecture. [PMID: 26119747] The BRC1a(Long) C-terminal region has a strong activation domain, whereas that of BRC1a(Short) lacks an activation domain and is predicted to form an amphipathic helix, the H domain, which prevents protein nuclear targeting. [PMID: 26119747]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400010076

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM597226	0.0	HM597226.1 Solanum tuberosum BRANCHED1A isoform 1 (BRC1A) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006341644.1	0.0	PREDICTED: transcription factor BRC1a isoform X1
TrEMBL	F6KB94	0.0	F6KB94_SOLTU; BRANCHED1A isoform 1
STRING	PGSC0003DMT400014572	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-27	TCP domain protein 12

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400010076
Entrez Gene	102578271

Publications ? help Back to Top
Mart Role of tomato BRANCHED1-like genes in the control of shoot branching. Plant J., 2011. 67(4): p. 701-14 [PMID:21554455] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Nicolas M,Rodr A Recently Evolved Alternative Splice Site in the BRANCHED1a Gene Controls Potato Plant Architecture. Curr. Biol., 2015. 25(14): p. 1799-809 [PMID:26119747]