PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400010075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 379aa MW: 42882.4 Da PI: 9.8208 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.1 | 1e-40 | 104 | 251 | 3 | 136 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasecea 75 kkdrhski T+ g+RdRR+Rls+e+a++fF Lqd LGfdk+skt+eWLl+++k a+ +l++ ss++++ce PGSC0003DMP400010075 104 SKKDRHSKINTAHGPRDRRMRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNDLVQKiskgkcsastnpnigvVSSPSESCEV 192 79*************************************************************88877766555555553333345533 PP TCP 76 esssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 s + +s+ + ++ +++k+kks ++a + +akesr +arararert+ k++++n++ PGSC0003DMP400010075 193 ISGVIDESAAT--NNTHKQQKKKKSIRRAIFHPVVAKESRTEARARARERTKIKKSLNNNN 251 33333333222..222222344444444445688999***************999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-43 | 104 | 245 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.256 | 105 | 163 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.331 | 227 | 244 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MYPSSPNISS SSSFFHINIP SPSMQYEPEF IQYFHDFQFI QPAAYDQNNL DTNITAEEGD 60 HKMEEDELIM KSCKNKKDES TSTTTTIRRK NNKRTTSGTG VGPSKKDRHS KINTAHGPRD 120 RRMRLSLEIA RKFFNLQDLL GFDKASKTVE WLLTKSKSAV NDLVQKISKG KCSASTNPNI 180 GVVSSPSESC EVISGVIDES AATNNTHKQQ KKKKSIRRAI FHPVVAKESR TEARARARER 240 TKIKKSLNNN NGDQSMAPDE DLTRSLGSWS TTFEDHQSGI QAYNNTNNIM NAVDNFNLVD 300 TSNWSPFMFN YHQINTEISQ EVCINLIRLL LLLLLIRSPN IYFYFYSSVA ASIDKLPVSW 360 QVMGSLIRAR KFYLSLLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400010075 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM921052 | 0.0 | HM921052.1 Solanum tuberosum BRANCHED1A (BRC1A) gene, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341644.1 | 0.0 | PREDICTED: transcription factor BRC1a isoform X1 | ||||
TrEMBL | M1A4H5 | 0.0 | M1A4H5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014572 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 6e-27 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400010075 |
Publications ? help Back to Top | |||
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