PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400010074 | ||||||||
Common Name | BRC1A, STBRC1A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 215aa MW: 24141 Da PI: 9.7002 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.5 | 2.2e-29 | 1 | 129 | 22 | 136 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssasnsssgkaaksa 94 +Rls+e+a++fF Lqd LGfdk+skt+eWLl+++k a+ +l++ ss++++ce s + +s+ + ++ ++ PGSC0003DMP400010074 1 MRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNDLVQKiskgkcsastnpnigvVSSPSESCEVISGVIDESAAT--NNTHKQ 87 8*******************************************8887776655555555333334553333333333222..222222 PP TCP 95 akskksqksaasalnlakesrakarararertrekmriknkl 136 +k+kks ++a + +akesr +arararert+ k++++n++ PGSC0003DMP400010074 88 QKKKKSIRRAIFHPVVAKESRTEARARARERTKIKKSLNNNN 129 344444444445688999***************999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-29 | 1 | 123 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.88 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.331 | 105 | 122 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MRLSLEIARK FFNLQDLLGF DKASKTVEWL LTKSKSAVND LVQKISKGKC SASTNPNIGV 60 VSSPSESCEV ISGVIDESAA TNNTHKQQKK KKSIRRAIFH PVVAKESRTE ARARARERTK 120 IKKSLNNNNG DQSMAPDEDL TRSLGSWSTT FEDHQSGIQA YNNTNNIMNA VDNFNLVDTS 180 NWSPFMFNYH QINTEISQEH QLTNFQYPGK LWEA* |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400010074 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM597226 | 0.0 | HM597226.1 Solanum tuberosum BRANCHED1A isoform 1 (BRC1A) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341644.1 | 1e-158 | PREDICTED: transcription factor BRC1a isoform X1 | ||||
TrEMBL | F6KB94 | 1e-157 | F6KB94_SOLTU; BRANCHED1A isoform 1 | ||||
TrEMBL | M1A4H4 | 1e-158 | M1A4H4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400014572 | 1e-143 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 3e-17 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400010074 |
Entrez Gene | 102578271 |
Publications ? help Back to Top | |||
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