PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009958
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 714aa    MW: 79926.3 Da    PI: 9.0358
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009958genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-074385446
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          W   E++ l++av+q  + +W  I+  +g  Rt+ qc s++q 
  PGSC0003DMP400009958 43 WDLLEEKNLLQAVQQKKMSNWVDISTSLGVCRTPFQCLSHYQR 85
                          7778*************************99**********96 PP
2Myb_DNA-binding39.51.3e-1293137146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r  WT eEd +l  av+ +G  +W  +a+ +  gRt+ qc +rw k
  PGSC0003DMP400009958  93 RREWTDEEDIRLSAAVETFGESNWQFVASVIE-GRTGTQCSNRWIK 137
                           678*****************************.***********76 PP
3Myb_DNA-binding39.21.6e-12147204246
                           SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                           g+W+++Ed++l+ av ++ ++               Wk++a++++ gRt  qc++rw +
  PGSC0003DMP400009958 147 GKWSADEDKRLKVAVMLFYPKtwrnvvqsvpwrtpIWKKVAQYVP-GRTHVQCRERWVN 204
                           89*****************99************************.***********87 PP
4Myb_DNA-binding475.9e-15214255346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            WT+eEd++l+ a+ ++G   W+++a++++  Rt++qc+ rw  
  PGSC0003DMP400009958 214 EWTEEEDLKLKSAIDEHGYS-WSKVAACIP-PRTDNQCRRRWIV 255
                           7*****************99.*********.9**********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001670.00413533No hitNo description
Gene3DG3DSA:1.10.10.603.0E-7948IPR009057Homeodomain-like
PROSITE profilePS500905.831934IPR017877Myb-like domain
SuperFamilySSF466893.15E-131687IPR009057Homeodomain-like
PROSITE profilePS512947.7983587IPR017930Myb domain
SMARTSM007177.1E-43989IPR001005SANT/Myb domain
PfamPF002491.4E-54385IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-94995IPR009057Homeodomain-like
SuperFamilySSF466892.21E-1873145IPR009057Homeodomain-like
PROSITE profilePS5129418.87788143IPR017930Myb domain
SMARTSM007177.0E-1292141IPR001005SANT/Myb domain
CDDcd001671.13E-995137No hitNo description
Gene3DG3DSA:1.10.10.608.6E-1696145IPR009057Homeodomain-like
PfamPF139212.1E-1196157No hitNo description
SMARTSM007171.6E-9145208IPR001005SANT/Myb domain
PROSITE profilePS500908.676147206IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-12147195IPR009057Homeodomain-like
CDDcd001678.67E-7148206No hitNo description
PfamPF002491.1E-5183204IPR001005SANT/Myb domain
SuperFamilySSF466896.12E-25186259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-20196253IPR009057Homeodomain-like
PROSITE profilePS5129421.937207261IPR017930Myb domain
SMARTSM007171.3E-13211259IPR001005SANT/Myb domain
PfamPF002497.7E-14214254IPR001005SANT/Myb domain
CDDcd001671.16E-11214257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MRLFLPKVNW DQVASMYLPG RSGAECQSRW LNWEDPLIKH EGWDLLEEKN LLQAVQQKKM  60
SNWVDISTSL GVCRTPFQCL SHYQRSLNAS IIRREWTDEE DIRLSAAVET FGESNWQFVA  120
SVIEGRTGTQ CSNRWIKSIH PAMKRCGKWS ADEDKRLKVA VMLFYPKTWR NVVQSVPWRT  180
PIWKKVAQYV PGRTHVQCRE RWVNSLDPSL KLDEWTEEED LKLKSAIDEH GYSWSKVAAC  240
IPPRTDNQCR RRWIVLFPDE VSMLKEAKKI RREAFISNFV DREDERPALR PNVIVPTQKL  300
SSRAGCETTS ANKKRKLRPR ATRDDMAPRC DAMCEMEKRR AEGSEGESSD LINSSLLPSS  360
DQGCNDAIKN KRPSKLRPRK TKKSTPNDKV PEASASSEST IADGNICKRR RSISSLVKKK  420
SRTVPSASST VESTTADGNI CKRRRRASSL VKQKSRASSS SLPNLSSSMA VVEEAESLVQ  480
DSRKVKNVMD KCHSASEYDV PCISPQGPPL AHPHLDKGTA DLNVGENENA STTGFQDDSL  540
LFLRNAVVCT DENASQLEAS ATPGTREGEN YGASVCHKLN ECSQLENNVK SSLDNLPQTA  600
DDCMTLASFV RKSRAKVSSS SSTKVARLHP GKAQSKAMAG DHSSRSCISG GHDGMEKISK  660
QECTSSNQIS GTEVEDDMPL SSFMGRVRKR ECTEVGDDMP LSLFMGRLKR EQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-26432539155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-26432539155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009958
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389740.0AC238974.1 Solanum tuberosum clone RHPOTKEY152M21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341558.10.0PREDICTED: uncharacterized protein LOC102578376
TrEMBLM1A4690.0M1A469_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000144180.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-110myb domain protein 4r1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]