PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009936
Common NameLOC102589612
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 279aa    MW: 31878.5 Da    PI: 7.1281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009936genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.8e-192572148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd+llv++++ +G g+W+  a++ g++Rt+k+c++rw++yl
  PGSC0003DMP400009936 25 RGPWTIEEDKLLVHYITNHGEGRWNMLAKHAGLKRTGKSCRLRWLNYL 72
                          89********************************************97 PP
2Myb_DNA-binding53.36.5e-1778121146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T++E++l+++++ +lG++ W++Ia++++ gRt++++k++w++
  PGSC0003DMP400009936  78 RGNLTPQEQLLILELHSKLGNR-WSKIAQYLP-GRTDNEIKNYWRT 121
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6842072IPR017930Myb domain
SuperFamilySSF466892.08E-3123119IPR009057Homeodomain-like
SMARTSM007177.9E-142474IPR001005SANT/Myb domain
PfamPF002492.5E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-242679IPR009057Homeodomain-like
CDDcd001675.32E-112772No hitNo description
PROSITE profilePS5129425.37773127IPR017930Myb domain
SMARTSM007174.7E-1577125IPR001005SANT/Myb domain
PfamPF002498.2E-1678121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2480126IPR009057Homeodomain-like
CDDcd001672.67E-1182121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
METEMSFLSK SSSSSSSDDD IELRRGPWTI EEDKLLVHYI TNHGEGRWNM LAKHAGLKRT  60
GKSCRLRWLN YLKPDVKRGN LTPQEQLLIL ELHSKLGNRW SKIAQYLPGR TDNEIKNYWR  120
TRVQKQARNL KIDSNSAAFQ EMIRSLWIPR LLQKIQSSSV PPSIQSSQSS TPPGFSTSTS  180
SNSSSHSCSI YNSPKITSEC PEITPRQIDD SDLNSFVKAH FPFDNSYDMD NFGQLATGNF  240
NDVMDYDQMS GDQNKLTSDS FWSNMDEFFY QKTGYEQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-29221271105MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-292212724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009936
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341595.10.0PREDICTED: myb-related protein 305-like
SwissprotQ9C9G71e-77MYB62_ARATH; Transcription factor MYB62
TrEMBLM1A4480.0M1A448_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000143830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-76myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]