PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009918
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 402aa    MW: 45829.1 Da    PI: 5.5808
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009918genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.66.9e-101659340
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          +r C+ + +k++++fC  ++ +lC++C +++H+       H++v
  PGSC0003DMP400009918 16 ARACDSCLSKRARWFCPADDAFLCQSCDVSIHSAnqlasrHERV 59
                          578*****************************667888888876 PP
2CCT66.86.1e-23341384144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrF k++
  PGSC0003DMP400009918 341 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFIKRN 384
                           9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-121461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8791461IPR000315B-box-type zinc finger
PfamPF006438.1E-81659IPR000315B-box-type zinc finger
CDDcd000213.66E-111761No hitNo description
PfamPF062031.2E-17341383IPR010402CCT domain
PROSITE profilePS5101716.013341383IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MTSGSKTANA IGGKTARACD SCLSKRARWF CPADDAFLCQ SCDVSIHSAN QLASRHERVR  60
LDTCSNKSTI TKLVDKTHQP AWHQGFTRKA RTPRNGKKAQ IRQRKKNEEN RVPEIGSDEN  120
EFENEEQLLY RVPIFDPFEA ELCNVPDETG SIADLDILLN TEDACDDLNL PEFLSSDIEL  180
AEFAADVETL LGGEEEQSTR LLNADFEDNK AIKIEVEDEE MRAVVACHLD PELDMEREGL  240
NWNFDEYYEE RVEQKVMAAV TEFVASAEYS GSSTKSDEKN RLFLRLNHEA VISAWPNQSS  300
PWTNGIRPHF NPDDYWPDFS ETCGGNLGYY GGHVRSGDGG REARVLRYRE KRRTRLFSKK  360
IRYEVRKLNA EKRPRLKGRF IKRNSSSSFS VPGFPYMMNK R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351367RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009918
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341612.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLM1A4330.0M1A433_SOLTU; B-box zinc finger protein 14
STRINGPGSC0003DMT4000143620.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-90B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]