PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009914
Common NameLOC102597156
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 390aa    MW: 43838.9 Da    PI: 5.5536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009914genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-1598144353
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                            kGVr +k +g+++AeIrdps+    kr++lg+f t e A +a++a r ++
  PGSC0003DMP400009914  98 PKGVRMRK-WGKYAAEIRDPSQ---GKRIWLGTFETVEAASQAYEAKRAEF 144
                           59****99.**********964...3*******************999775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.81897157IPR001471AP2/ERF domain
PfamPF008471.1E-898143IPR001471AP2/ERF domain
PRINTSPR003671.6E-698109IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1499143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-1899140IPR001471AP2/ERF domain
CDDcd000181.15E-1799139No hitNo description
SMARTSM003804.3E-1199163IPR001471AP2/ERF domain
PRINTSPR003671.6E-6120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MKLEKDVKRE RVMDGGISSV RKVRIIYDDP DATDSESDDD RFDKNVSRIK RVVKEIVIPV  60
VSWEKEFKKC CKLDDIGIKD SKKIHENKKV QLKSSALPKG VRMRKWGKYA AEIRDPSQGK  120
RIWLGTFETV EAASQAYEAK RAEFDRIISL GKGKNLSSAP PAECSSHPIN GKNHVYSHPS  180
PSSVLDVPTS SAAAPLESND NPTRDMAQMP DSGFNLSFED QMLHEFINQG RQGISELMEH  240
PLIEQGSISN SLVEMTQVNI KKKTITRPPT IPSCKKLTKG IEDHRNDKSI FSVLDKPPIM  300
SPCIRTELLN LNIEETAVMG NNLKLLGFDD NALFDKDLAQ TFDPYTDAIA LDSTFQCCDG  360
WNECVYCKVF TDEVDLDEVD LRWLENVLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009914
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161718.10.0PREDICTED: uncharacterized protein LOC102597156
TrEMBLM1A4290.0M1A429_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000143580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.29e-20ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]