PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009887
Common NameLOC107059576
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 329aa    MW: 36399.6 Da    PI: 5.0502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009887genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-192475156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                          +++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a++ l+g+
  PGSC0003DMP400009887 24 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75
                          6799******.7*********....4456*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.99E-312482No hitNo description
PfamPF008472.9E-132474IPR001471AP2/ERF domain
PROSITE profilePS5103220.4682582IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-202583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-292582IPR001471AP2/ERF domain
SMARTSM003809.8E-362588IPR001471AP2/ERF domain
PRINTSPR003671.0E-72637IPR001471AP2/ERF domain
PRINTSPR003671.0E-74864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKPPVPQPSD GIRTRRKPSS RGHPRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED  60
AARAYDQAAR TLRGANARTN FELPASDSHQ GSSILENSVP FNFEEACRTE EPENSLVGAL  120
KAKLFNSKNS RSFIQAYASN STSQLASKVK PSLPCIEIKK TSSQTEKLPK IDKYSDDLFR  180
GNHNLDYISL MTNDYQPMIS SSQCQDNQWY SGTNSAIMWD NEQGRLPWGE PQMSPVQDEV  240
SFSTTINNNI FGGTATCTWP VSVSGEPMVD LSTFGEVDVL NGSIMMPDMN GLTQIASVPT  300
EQQFLQFENG LWGVGDNAVW DPFLLSSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1523811271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009887
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161747.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
TrEMBLM1A4100.0M1A410_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000143240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-19related to AP2 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]