PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009745
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 315aa    MW: 35667.9 Da    PI: 7.9481
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009745genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.35.9e-101098399
                   NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
                           GfrFhP+++el+ ++Lk+ + +  ++  +vik  d++ + ePw++      +ek +  ++ +++    +kr +r++ sg+W+ + + + +
  PGSC0003DMP400009745 10 LGFRFHPSNKELI-NHLKRFMLDGIFPRPHVIKLNDLFGAlEPWQII----DGEKTLLSYAINNS----NKRFSRTVGSGTWSGQTSAEYI 91
                          6************.99*********999999****998655*****6....34555555555444....4699**********99999999 PP

                   NAM 93 lskkgel 99
                          +++k+++
  PGSC0003DMP400009745 92 KKSKNKD 98
                          8854433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-96104IPR003441NAC domain
PfamPF023651.9E-51194IPR003441NAC domain
Gene3DG3DSA:2.60.120.2003.6E-7213244IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561121.94E-19214313IPR011009Protein kinase-like domain
PROSITE profilePS5001111.807231314IPR000719Protein kinase domain
PfamPF000693.1E-9233313IPR000719Protein kinase domain
PROSITE patternPS001070237259IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.201.8E-15245308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALSRSKHSL GFRFHPSNKE LINHLKRFML DGIFPRPHVI KLNDLFGALE PWQIIDGEKT  60
LLSYAINNSN KRFSRTVGSG TWSGQTSAEY IKKSKNKDRF VICRIKEKKK EEEKNNNDVK  120
DEDADGLVDP LFEGCILVYF LVYRIDVFEF DVKGGKDGNP PDLTTIFFET SKKDNKLVEP  180
EAIEKHAQLE KTVQEDPSLS SIEIVEKCCG PPEVAPQRIS YCEIQRATHG FDVNNLLGSG  240
SFGSVYKGTV ANGMTVVVKV FNVQMEGTFQ TCDRKCEIFL NLRHRNLTKI ISNCCNLDFK  300
ALILEYMPNK SLNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755234e-61HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1A3R20.0M1A3R2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000141020.0(Solanum tuberosum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]