PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009522
Common NameLOC102603081
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 336aa    MW: 37695.1 Da    PI: 7.0592
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009522genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.82.8e-5551321128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+++yL++kv++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkd
  PGSC0003DMP400009522   5 LPPGFRFHPTDEELITYYLNNKVSDFNFTA-RAITDVDLNKSEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKD 92 
                           79*************************999.89***************999999*********************************** PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ke+++  +g lvg+kktLvfy+grapkgekt+Wvmheyr+
  PGSC0003DMP400009522  93 KEIFRGgTGVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRI 132
                           ****9867778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-633153IPR003441NAC domain
PROSITE profilePS5100560.3415153IPR003441NAC domain
PfamPF023656.2E-296132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLNNKVSDF NFTARAITDV DLNKSEPWDL PAKASMGEKE  60
WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGT GVLVGMKKTL VFYRGRAPKG  120
EKTNWVMHEY RIETRFGYKP SKEEWVVCRV FQKSSTVKKP QPSSSSPLSL ESPCDTNYTI  180
ANELGDIELP FNFNYLTTTP SSAINNISLH NYNNDNINLA AAAAAATREA AAANTHPLLP  240
WSSNLLSSNL SSVNSLLFRA LQLRGYSPRE QATSSTTTTH DYAFMLPQEN ILTTQFGNDF  300
AVNSTGAPSS SMALDNSVQN QQPQEQLYKL DSNIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-55415919174NAC domain-containing protein 19
3swm_B4e-55415919174NAC domain-containing protein 19
3swm_C4e-55415919174NAC domain-containing protein 19
3swm_D4e-55415919174NAC domain-containing protein 19
3swp_A4e-55415919174NAC domain-containing protein 19
3swp_B4e-55415919174NAC domain-containing protein 19
3swp_C4e-55415919174NAC domain-containing protein 19
3swp_D4e-55415919174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5982210.0KT598221.1 Solanum tuberosum cultivar Desiree NAC103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353806.20.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLM1A3A80.0M1A3A8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000137530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.18e-95NAC domain containing protein 58
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]