PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400009444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 36722.2 Da PI: 8.2381 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38 | 2.7e-12 | 44 | 69 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +t++C+f++rtG C yG++C+++H+p PGSC0003DMP400009444 44 GTSNCSFYMRTGSCGYGAKCRYNHPP 69 799*********************97 PP | |||||||
2 | zf-CCCH | 33.8 | 5.8e-11 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rt tCk+G++CkF+H++ PGSC0003DMP400009444 90 EPTCQYYLRTATCKFGASCKFHHPR 114 689********************96 PP | |||||||
3 | zf-CCCH | 37.6 | 3.7e-12 | 135 | 159 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++C+++++tG+Ck+G +CkF+H+ PGSC0003DMP400009444 135 EERECSYYLKTGQCKFGITCKFHHP 159 5799********************9 PP | |||||||
4 | zf-CCCH | 37.2 | 4.9e-12 | 290 | 315 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ +tG Ck+G++CkF+H+ PGSC0003DMP400009444 290 PGQPVCQYYIKTGDCKFGSSCKFHHP 315 5789*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.957 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-10 | 44 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-6 | 45 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.469 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-5 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 93 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.413 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-5 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-4 | 139 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.835 | 289 | 317 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-6 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 291 | 315 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 292 | 317 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 294 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MDLYGRSHSD QQSEWVPVGP ETGLEESMRR LGLWSREAYP ERSGTSNCSF YMRTGSCGYG 60 AKCRYNHPPD RSSVGAVLLE RSEYPERIGE PTCQYYLRTA TCKFGASCKF HHPRNLGGSL 120 SNISLNVYGY PLHPEERECS YYLKTGQCKF GITCKFHHPD HTEVSAPATA RPFYPTASSL 180 PTPPEEYNSA STSSRVARPQ LLSGPYVPGT YGPVLLHPGV VTIQNWSTYS GPVSPALSPG 240 AQPSAGMASI YGMPQLASST AAFAAPYSPL HSAAGPSSSA LKENRFPERP GQPVCQYYIK 300 TGDCKFGSSC KFHHPADWIA SKTDCAFSPL GLPLRPV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400009444 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-160 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-160 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366677.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Swissprot | Q84W91 | 1e-133 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | M1A347 | 0.0 | M1A347_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400013647 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-135 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400009444 |
Publications ? help Back to Top | |||
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