PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009430
Common NameLOC102603868
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 414aa    MW: 45047.1 Da    PI: 5.6868
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009430genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-06344439
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          ++C+ ++e++ + +C+++  +lC +C  + H+       H++
  PGSC0003DMP400009430  3 HICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                          68*****************************65677777765 PP
2CCT63.18.7e-22356399144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R  a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  PGSC0003DMP400009430 356 RSDAVLRYKEKKKTRKFDKHVRYASRKARADVRRRVKGRFVKAG 399
                           889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
CDDcd000211.36E-7447No hitNo description
PfamPF062032.8E-16356398IPR010402CCT domain
PROSITE profilePS5101715.011356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAIVRR  60
VEEKVSLCKN CDSIGHAGSG TGSMHNRQAL SSYTGCPSAA ELSTIWSFLL DNPLGGDSTC  120
EKGMGSMSIT DNRPTDSRAP QGTFSSQDAS ATVEVSEMHT PNKSSVLVGS SMLTLGNKLN  180
KAEQIVGSVN FSSSKGCYSG VKGSTIYEED PFSQDFNMDE VDLSFENYEE LFSGSLDNPN  240
QLFENDDIDG LFGTKDMSVS DSCCQDANAV EGSSIRRVRT MLPACSNAES ADSLMSCKTE  300
PTVYFARQAS ILSFSNLGGE SNAGDYQECG ASTMLLMGEP PWCHPCPESS LASSSRSDAV  360
LRYKEKKKTR KFDKHVRYAS RKARADVRRR VKGRFVKAGD AYDYDPLNET RSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353101.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_006353102.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_006353103.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015166684.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015166685.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_015166686.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-124COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLM1A3340.0M1A334_SOLTU; B-box zinc finger protein 13
STRINGPGSC0003DMT4000136240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-111B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]