PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009069
Common NameLOC102585595
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 354aa    MW: 39807 Da    PI: 6.7942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009069genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.8e-13173220355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  PGSC0003DMP400009069 173 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 220
                           6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10173220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17175236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.18E-13175224No hitNo description
SMARTSM003534.8E-15176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEYYGFNQQW PISSYDELSA ISIATSFGHE NNLHESFMSH DQPLLGHKRP IELSQIVEER  60
PLKNSKTGHN WNNNIENDQI LSSQSVVSPN YSHLMNSSNN YTNQQVVTMK PKEETTNLSS  120
SSISFAADHC HNNMVCHQDS FANQNYMMFK AANNSCQGSN KSVSTNGKLT QAQDHIIAER  180
KRREKLSQRF IALSALIPGL KKMDKASVLG DAIKYLKQLQ EKVKTLEEQT KKKSVESVVF  240
VKKYELYGDG ENSSSDENYS SGTVPVDEAL PEIEARISEK DVLIRIHCEK RKGIVEKTVA  300
EIEKLHLSVI NTCALSFGSS ALDITIIAQM DEEFTMTVKD LVKNLRSALK MFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14174248880Transcription factor MYC2
5gnj_B7e-14174248880Transcription factor MYC2
5gnj_E7e-14174248880Transcription factor MYC2
5gnj_F7e-14174248880Transcription factor MYC2
5gnj_G7e-14174248880Transcription factor MYC2
5gnj_I7e-14174248880Transcription factor MYC2
5gnj_M7e-14174248880Transcription factor MYC2
5gnj_N7e-14174248880Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009069
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385120.0AC238512.2 Solanum lycopersicum strain Heinz 1706 clone hba-71f18, complete sequence.
GenBankAC2389280.0AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367079.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_015160709.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0723e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLM1A2910.0M1A291_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000130740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-60bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]