PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009023
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 336aa    MW: 38164.5 Da    PI: 5.063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009023genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.8e-062292671154
                           HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L++A+eYI+ L
  PGSC0003DMP400009023 229 VRKEKMGDRITALQQLVSPF-----GKTDTASVLQEAIEYINFL 267
                           5778999**********998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.081218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-9228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-6228271No hitNo description
SuperFamilySSF474592.36E-11228282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0095229273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADEFFQDGV YGESLWINST KNIFSLSSST NCGSSILDPI IGQYNFAWPN DDQFLDMKNR  60
SNNDDYYSSS DDSMVFQELP KNHNLGINGN SSSPDWNHSL NDSMLQENLN SRQNCPHHNE  120
LKRNICSIIS EDNSLIKPIM NQDFTNYYSD LLQTLFASTD LHEEQPFNYP SSSINDRQKM  180
NDFVPSLPKS DIEIIGESKL SSITKNNTNE QTFKRQRIET PSPLPTFKVR KEKMGDRITA  240
LQQLVSPFGK TDTASVLQEA IEYINFLHGQ VNVFSNRYMK NGPPTQHQQV KELQEGLKQG  300
LRSKGLCLVP ISSTFPLAAE TTMEFWTPTL GRTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-134HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069322.10.0transcription factor bHLH112-like
TrEMBLM1A2530.0M1A253_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000129970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-49bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]