PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008827
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 71aa    MW: 8140.23 Da    PI: 6.2344
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008827genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.6e-083312755
                          HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox 27 aeereeLAkklgLterqVkvWFqNrRake 55
                          ++e+  LA+++gL+++q+ +WF N+R ++
  PGSC0003DMP400008827  3 ESEKVALAESTGLDQKQINNWFINQRKRH 31
                          678899********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.56134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-15237IPR009057Homeodomain-like
SuperFamilySSF466893.38E-11347IPR009057Homeodomain-like
PfamPF059201.5E-10330IPR008422Homeobox KN domain
CDDcd000861.69E-8335No hitNo description
PROSITE patternPS000270932IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MQESEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQS AAALYMEGHY  60
MGEAPFRLGQ *
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3351251e-112KP335125.1 Solanum tuberosum knox variant X1 (POTH20) mRNA, complete cds, alternatively spliced.
GenBankKP3351261e-112KP335126.1 Solanum tuberosum knox variant X2 (POTH20) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305604.16e-43homeotic protein knotted-1
RefseqXP_006356812.17e-43PREDICTED: homeotic protein knotted-1 isoform X1
RefseqXP_016568950.17e-43PREDICTED: homeotic protein knotted-1
SwissprotQ413302e-43KN1_SOLLC; Homeotic protein knotted-1
TrEMBLM1A1M89e-46M1A1M8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000127123e-42(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-38KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]