PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008822 | ||||||||
Common Name | LOC102603425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 37248 Da PI: 7.8128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 3e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl PGSC0003DMP400008822 14 RGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.2 | 7e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PGSC0003DMP400008822 69 GGFSEEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.124 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.72E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.38E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.444 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.18E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK 120 QRQKQGSRKG KEINTISTIS NNINNMNQNP CWPELPIMQQ PIQFSNNDHT SIRKLLIKLG 180 GKFSENDQLT NVVSPNSQYP IDNSSMQLMY QNHINLISSS PIDNVFNNMT TPNTDPYNMN 240 GEASNFTAEF EHMINNHQQK LDGLEFLYED DVFIDKSAST SGGNLDWESM NPYVLPLPPI 300 AASNDGGNFQ QGVILQEGAL DELRYPMAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00089 | SELEX | Transfer from AT3G49690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008822 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356817.1 | 0.0 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | M1A1M3 | 0.0 | M1A1M3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012702 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-79 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008822 |
Entrez Gene | 102603425 |
Publications ? help Back to Top | |||
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