PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008822
Common NameLOC102603425
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 330aa    MW: 37248 Da    PI: 7.8128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008822genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-161462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  PGSC0003DMP400008822 14 RGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                          89*********************************************97 PP

2Myb_DNA-binding37.27e-1269111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  PGSC0003DMP400008822  69 GGFSEEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                           569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.124962IPR017930Myb domain
SuperFamilySSF466895.72E-2611109IPR009057Homeodomain-like
SMARTSM007176.7E-121364IPR001005SANT/Myb domain
PfamPF002494.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-241569IPR009057Homeodomain-like
CDDcd001678.38E-91662No hitNo description
PROSITE profilePS5129421.44463117IPR017930Myb domain
SMARTSM007173.3E-1167115IPR001005SANT/Myb domain
PfamPF002491.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2370117IPR009057Homeodomain-like
CDDcd001673.18E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK  120
QRQKQGSRKG KEINTISTIS NNINNMNQNP CWPELPIMQQ PIQFSNNDHT SIRKLLIKLG  180
GKFSENDQLT NVVSPNSQYP IDNSSMQLMY QNHINLISSS PIDNVFNNMT TPNTDPYNMN  240
GEASNFTAEF EHMINNHQQK LDGLEFLYED DVFIDKSAST SGGNLDWESM NPYVLPLPPI  300
AASNDGGNFQ QGVILQEGAL DELRYPMAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008822
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356817.10.0PREDICTED: transcription factor RAX1-like
TrEMBLM1A1M30.0M1A1M3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000127020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-79myb domain protein 84
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]