PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008794
Common NameLOC102582107
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 598aa    MW: 64328.1 Da    PI: 8.3867
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008794genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-24206250145
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                           d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  PGSC0003DMP400008794 206 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 250
                           79****************************************985 PP
2QLQ61.81.9e-21138174137
                   QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k
  PGSC0003DMP400008794 138 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 174
                           59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-12138174IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.516139174IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.1E-16139173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663206250IPR014977WRC domain
PfamPF088797.1E-21207249IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDFGGLDSGG GGVICSDNTS STMFVASAET KQKWYGSGGF NKHERSSVTE DEWNKESKLA  60
KTSDDFSSSK ATMMFQQLPI SHENQQMLSF STPNSQNHVT MPYYNQHPSS AFARNTSGYG  120
SGALSAGNMH GLIAGVKGPF TPSQWMELEH QALIYKYITA NVPIPPYLLN PIRKALESAG  180
FTTFAGLRPN ALGWGAFHLG FSNSNDPEPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG  240
RHRSRKPVEG QTGNSASGNN TGATTTSAKL TNMSSAASAA LASGGGAAAS NTLNLSHHNQ  300
LSNLQPAGTN LSTTSPYLER SYTAKENFGE RYSDTKGSSV VSPSVKEPQY SNQKAQNPYG  360
LTSRAEFGLV CADSLINPLN KNSSLVNCRG YVNSDVRDQE RKLQHHPLRQ FMDELPKTQS  420
DQSNVSWPDI DLQSDPTQLS ISIPLVTSDF MSSTSSPAND KLTASPHRSR EHEAIQMGLG  480
IGTIISEHNQ RQGSWIPISW ESSLGGPLGE VLHSTNSSSG DCKNKSALNL MTEGWDRSPR  540
MGSSPTGVLQ KSSFGSLSNS SAGSSPRAEH SKTTNEGSSL CNGLLGTTLM NPTLPAM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9978520.0FJ997852.1 Capsicum annuum UPA17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356839.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLM1A1L20.0M1A1L2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000126660.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-95growth-regulating factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]