PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008715
Common NameLOC102601077
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 373aa    MW: 41506.7 Da    PI: 4.5757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008715genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-18102151255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++  +++++g
  PGSC0003DMP400008715 102 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDVEARRIRG 151
                           69*******.**********954...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-31102161IPR001471AP2/ERF domain
SMARTSM003807.3E-37102165IPR001471AP2/ERF domain
CDDcd000182.81E-32102160No hitNo description
PROSITE profilePS5103223.92102159IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22102161IPR016177DNA-binding domain
PRINTSPR003675.8E-11103114IPR001471AP2/ERF domain
PfamPF008471.0E-10103151IPR001471AP2/ERF domain
PRINTSPR003675.8E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MCGGAIISDL VPPSRISRRL TADFLWGASD LNNKKKNPSN YHSKPLRSKF IDLEDEFEAD  60
FQHFKDYSDD DEDVKAFGSK SVRSVDSNCD ADRSSKRKRK NQYRGIRQRP WGKWAAEIRD  120
PRKGIRVWLG TFNSAEEAAR AYDVEARRIR GKKAKVNFPD EAPVSVSRRV VKQNPQEALR  180
EETLNTVQPD MTYINNLDGG SDESFSFFEE KPATKQYGYE NVCFTAGDMG LGSVSPSAGT  240
NVYFSSDEGS NTFDCSDFGW GEPCARTPEI SSVLSEVLET NETHFDEDAR PEKKLKSCSS  300
TSLTDDGNTV NTLSEELSAF ESQMKFLQIP YLEGNGDASV DAFLNTSAIQ DGGNAMDLWF  360
FDDVPSLMGG AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-21102159260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A5e-201011611374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008715
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1643470.0KC164347.1 Solanum tuberosum clone RSI9 ethylene responsive factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305599.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLM1A1E20.0M1A1E2_SOLTU; Ethylene responsive factor 1
STRINGPGSC0003DMT4000125470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-66related to AP2 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]