PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008672
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 391aa    MW: 42992.8 Da    PI: 5.9889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008672genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.3e-07294334954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            rrRR++i +++  L++l+P         ++ a++L +A +Y+k L
  PGSC0003DMP400008672 294 ARRRREKISERIRILQKLVPGG-----SNMDTASMLDEAANYLKFL 334
                           59******************95.....48***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-9291338No hitNo description
SMARTSM003535.8E-11291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-12291342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-11291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4294334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MNFQEFGAAF DPIDILSSWN ISQRQEAATR LAADSVAAKS GAGSIGDCTN SKIGSSSSFP  60
PRNNYLPYLG NNQVPICGLM ADVSSIGLFS KNRSPDCLLS ATNTSNTNTS GELDDVIFSD  120
DSESLWNIHT NNAVSSGESA IDAYKSKPID ANDNNNIHYS VNELDETVSC NNFITSSEGN  180
RYNMDKRSHN ALLESDSSNR DYVFQLISEN DQPKSKKSRS EYKLPSSSNI NFQQASSSAC  240
SIVDPDSEAI AQMKEMIYRA AAFRPVSSVR EDVMAEKPKR KNVRISMDPQ TATARRRREK  300
ISERIRILQK LVPGGSNMDT ASMLDEAANY LKFLRTQVNA LGAFGFNIDP SIINNNFTTS  360
LSSIPLINYP FPLQPHFPMQ NLNPIHHPKC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278297KRKNVRISMDPQTATARRRR
2294299RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357366.10.0PREDICTED: transcription factor bHLH87-like
SwissprotQ8S3D26e-66BH087_ARATH; Transcription factor bHLH87
TrEMBLM1A1A70.0M1A1A7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000124870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]