PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008633
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 416aa    MW: 47482.8 Da    PI: 6.5765
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008633genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like59.66.7e-19177227455
               G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +Wt +LH++F++ +e L G+    Pk+i+e+m+v+gLt+ +v+SHLQk R+
  PGSC0003DMP400008633 177 TKWTANLHAKFMKSLELL-GEGSCYPKQIVEVMNVPGLTRMQVASHLQKCRS 227
                           68****************.99****************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-13172227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-18173227IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16177227IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MASTCYAMTE GLHVMLVDHD EENAAEMVDL LEFYGYKVVS DEYNDLLAKK ALKEGAYLFV  60
KRPLNEEIVK HLWQFILTKR IQKDEVRKES EDEYQMNVDD IDKDNFVGDN EKLSGEKNNV  120
SDIEEQSDNI HEAENNIVSN GECKLRRKSR RKNSKETNEG ESQNTTINKV VRRKNCTKWT  180
ANLHAKFMKS LELLGEGSCY PKQIVEVMNV PGLTRMQVAS HLQKCRSDNW RSPEERKYNR  240
RPSSNTSLSD SQQKNSFRKF GTMPHFQKNI SQRNSELTFP TLHTNSTFVS GESSTQEPLY  300
PPQFHVQPHH LNIGNSFNNS FSSISYNVGG VIQQQRGVSF ETLDSSQQLQ GSIIGSTNYR  360
SDLTLNNGDR HTQNDYNLNL NVPHGTTYPG NIMLFDIDIE SATCNKLKVT NANFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008633
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168890.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLM1A1880.0M1A188_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000124260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.18e-14response regulator 20
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]