PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008402 | ||||||||
Common Name | LOC102577797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | YABBY | ||||||||
Protein Properties | Length: 220aa MW: 24481.7 Da PI: 7.6503 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 220.4 | 5.4e-68 | 21 | 182 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll l +++ h s ++llee +++ n+ +n++++ ++ PGSC0003DMP400008402 21 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTNHHHHFGHTYFSPSHNLLEEISNATPNFLMNQSNSAHEFV 109 689**************************************976666666555555555555556888888888888888777777776 PP YABBY 95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ + +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl PGSC0003DMP400008402 110 QLPA----RPGFDDLPRPPPvINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 182 6666....457889999999789****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.8E-65 | 21 | 182 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 123 | 176 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.6E-5 | 130 | 176 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSSSNSLSLD HLPPPPPPPP PSEQLCYVHC NVCDTVLAVS VPCTSLFKTV TVRCGHCTNL 60 LPGWLLPSTN HHHHFGHTYF SPSHNLLEEI SNATPNFLMN QSNSAHEFVQ LPARPGFDDL 120 PRPPPVINRP PEKRQRVPSA YNRFIKEEIQ RIKAGNPDIS HREAFSAAAK NWAHFPHIQF 180 GLMPDQTVKR TNVRQQDGED VLMKDGLFNT SANVSVSPY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008402 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667760 | 0.0 | KJ667760.1 Solanum sisymbriifolium YAB1 protein mRNA, complete cds. | |||
GenBank | KJ667761 | 0.0 | KJ667761.1 Solanum aethiopicum YAB1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355492.1 | 1e-162 | PREDICTED: protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 1e-75 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-75 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | M1A0N9 | 1e-161 | M1A0N9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012083 | 1e-162 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 1e-67 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008402 |
Entrez Gene | 102577797 |
Publications ? help Back to Top | |||
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