PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008251
Common NameLOC102581536
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 479aa    MW: 53425.2 Da    PI: 5.4901
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008251genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35191092101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++
  PGSC0003DMP400008251  19 FLLKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFLKDQ 98 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           k+ll++i+r+k
  PGSC0003DMP400008251  99 KHLLKNIHRRK 109
                           *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.36E-3615108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6015108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-3815108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-201942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3119108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-205769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDVISAAVAA GGGGGPAPFL LKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFLKDQKH LLKNIHRRKP IHSHSHPPGS  120
TVDPERAAFE EEIDKLTREK SGLEANVSRF RQQQSAAKLQ LEELTGRVGS IEQRQESLLA  180
FVEKAIQNPD FVERLAQKLE SMDISAFSKK RRLPQIDSTQ PVQESMSVDN HSSSRVEFGN  240
LSHQDFSNKL RLELSPAVSD INVLSCSTQS SNDDGGSPAH RRISEGWSRE VQLRTVGVIY  300
TPEAIELSDT GTSFTLKMDS SLPRASSNVE SSRLHPLPQS LTSNEEVDGH ISCQLNLSLA  360
SCLSQVDKNQ YSVRMPQIGQ EIGKRFESQS DANDKIPPTD DKSLPPSHDA TANKQVPAAA  420
PVRVNDVFWE QFLTERPGCS DNEEASSSYK GNSYDEQDER KSNQGVASNT RKVEHLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-24110812129Heat shock factor protein 1
5d5v_B6e-24110812129Heat shock factor protein 1
5d5v_D6e-24110812129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008251
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349912.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ51e-161HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLM1A0B90.0M1A0B9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000118710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-164HSF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]