PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008227 | ||||||||
Common Name | LOC102594123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 469aa MW: 52556.2 Da PI: 6.5111 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 478.4 | 3.6e-146 | 47 | 465 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lLl+cA++v++g+le+a+ +L ++s+lasp+gd+mqR+a+yfteALa r++rs+++lykal++++ s +see+ ++k+f+e++P PGSC0003DMP400008227 47 LIHLLLACANHVAAGSLENANIALDHISQLASPSGDTMQRIASYFTEALADRILRSWPGLYKALRSTKLS--VVSEEILVRKMFFEIFP 133 689*************************************************************999998..6**************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +lk++++++NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTgv++ +ke l ++++ L++ Ae+l++pf+f PGSC0003DMP400008227 134 FLKVAFVVTNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLTQEAEKLDIPFQF 218 ************************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214 n v++rle+l++e+Lrvk+gEala+++v+qlh+ll PGSC0003DMP400008227 219 NQ-VVSRLENLDVEKLRVKTGEALAISSVMQLHTLLahdnekksplpskhsngvnlhralvnqntlgeflekdmangcspsndtasssp 306 **.7******************************************************************************9988655 PP GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302 +++s+ ++d++L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le++lpr+s er kvE++llg+ei+n++aceg PGSC0003DMP400008227 307 lCSTGST--KIDSFLNALWGLSPKVMVVTEQDSNHNGTTLMERLSESLHFYAALFDCLESTLPRTSLERLKVEKMLLGEEIRNIIACEG 393 4444444..459***************************************************************************** PP GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+erhe+lekW +r++++GF++vpls++a+ qa++ll+ ++ +gy+++ee+g++v++W+dr+L+svS+Wr PGSC0003DMP400008227 394 IERKERHEKLEKWFQRFDTSGFGNVPLSYYAMLQARRLLQSYSCEGYKIKEENGCVVICWQDRALFSVSSWR 465 ***********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.884 | 21 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-143 | 47 | 465 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPIQIFP MMSVSPSFGS SNQWLKELKS EERGLYLIHL LLACANHVAA 60 GSLENANIAL DHISQLASPS GDTMQRIASY FTEALADRIL RSWPGLYKAL RSTKLSVVSE 120 EILVRKMFFE IFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAAEPLQWR ALLQDLSARP 180 EGPPHLRITG VHQQKEVLDQ MAHVLTQEAE KLDIPFQFNQ VVSRLENLDV EKLRVKTGEA 240 LAISSVMQLH TLLAHDNEKK SPLPSKHSNG VNLHRALVNQ NTLGEFLEKD MANGCSPSND 300 TASSSPLCST GSTKIDSFLN ALWGLSPKVM VVTEQDSNHN GTTLMERLSE SLHFYAALFD 360 CLESTLPRTS LERLKVEKML LGEEIRNIIA CEGIERKERH EKLEKWFQRF DTSGFGNVPL 420 SYYAMLQARR LLQSYSCEGY KIKEENGCVV ICWQDRALFS VSSWRCRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-41 | 29 | 467 | 1 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008227 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349782.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | M1A099 | 0.0 | M1A099_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011839 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008227 |
Entrez Gene | 102594123 |
Publications ? help Back to Top | |||
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