PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400008157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 21906.6 Da PI: 5.7804 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.7e-10 | 19 | 41 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++++ gRt++++k++w++ PGSC0003DMP400008157 19 RWSKIAQHLP-GRTDNEIKNYWRT 41 6*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.01E-7 | 17 | 48 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.20E-7 | 19 | 41 | No hit | No description |
PROSITE profile | PS50090 | 6.609 | 19 | 43 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 19 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-7 | 19 | 41 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
YFPIQLITSL LFPFFWVCRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL KCDVNSKQFQ 60 DTLRYLWIPR LVERIQASKI SNNNASSETQ QPVLRTGITE LIPIQLTNNN NNSILITSVK 120 PENSSVVTSS ENSIGTQVSP NQDYYQVNQS DQLWFEDYQA MDQQNNKELW MDNLCNIEDI 180 WSYLEN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400008157 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 1e-71 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165205.1 | 1e-132 | PREDICTED: transcription factor MYB108-like, partial | ||||
Swissprot | Q9FGY3 | 9e-37 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | M1A030 | 1e-134 | M1A030_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011743 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 3e-36 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400008157 |
Publications ? help Back to Top | |||
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