PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008095
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 380aa    MW: 42827.4 Da    PI: 6.6261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008095genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.3e-08238285455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400008095 238 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 285
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.23E-9232289No hitNo description
SuperFamilySSF474592.09E-16232300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16234301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.25234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5238285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDKKNLFLNN VNTMNELNCT STNFYNPNWE NSSMDYQNDN ILSSNSNNFG DNFGEISPNS  60
FVDSNNNSCY TTPLNSPPRL NLSNFDHQIK GNFPNISNNL PHFSANLGNF SCFGGNNLVG  120
NETKFVQNLE SCKLSRNKYV KESEFGDSRE NSSISQQIQL EEIGIKCPND ANSKKGKSIP  180
KRKAKEITPK DDNVSTQNNE SSSKKVKTDD KNEENQKPQE PLKDYIHVRA RRGQATDAHS  240
LAERVRREKI GERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQCQVEF LSMKLSNMNP  300
TTDFNAESLT SKNMFQSVGS LHHNMNSSES TIQEFPYGFQ SQQGPNLQSF LPKETEFPFK  360
VNPHLDGFVE QTPQVIKNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185PKRKAKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349897.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLM0ZZX20.0M0ZZX2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000116510.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-60bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]