PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400008052

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 299aa MW: 32725.9 Da PI: 6.6442

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400008052	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.8	2.7e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl PGSC0003DMP400008052 49 RPRLRWTAELHERFVDAVTQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 103 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-32	46	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.03	46	106	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-17	48	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-24	50	104	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-26	147	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MYSSLGIDGN GGVNEYHHHH HLHSLQSSLS GEMTNLAGDA CLVLTADHRP RLRWTAELHE 60 RFVDAVTQLG GPDKATPKTI MKAMGVKGLT LYHLKSHLQK YRLGKQPKEA AESYKDESCV 120 AESQDTSPSA LGSSKVVAQD INDCGYQVTE AFRVQMEVQR RLHEQLEVQR HVQLRIEAQG 180 KYLQTILEKA CKVLNYTSVE SPDLDTAREQ LSELAIKGAN NCDGIVPVSS LPEVVSSYEN 240 KNASDMPASI GDCLPSNTSM ASPTSIGALK KRPRALANGD VLPVENNMTQ VQWMMTNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-19	49	105	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-19	49	105	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-19	49	105	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-19	49	105	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-19	49	105	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-19	49	105	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-19	49	105	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-19	49	105	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400008052

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349927.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	Q8LAJ7	2e-98	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	M0ZZT5	0.0	M0ZZT5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400011598	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-97	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400008052

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]