PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008014
Common NameLOC107059299
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 188aa    MW: 21017.3 Da    PI: 5.1587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008014genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1865113355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a++  + +++g
  PGSC0003DMP400008014  65 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFITAEDAARAYDIKAVEFRG 113
                           8*******.**********7.....337**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-3464127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3164122IPR001471AP2/ERF domain
PROSITE profilePS5103223.76264121IPR001471AP2/ERF domain
PRINTSPR003671.1E-106576IPR001471AP2/ERF domain
CDDcd000184.82E-2965121No hitNo description
PfamPF008471.4E-965111IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2165122IPR016177DNA-binding domain
PRINTSPR003671.1E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVSALKHVFS GAAADGRADG EAAKLLWEVQ NAATSDNSMP RNVDDTVSLE SGKKKRRRRN  60
TKKEFRGVRQ RPWGKWAAEI RDPHKAQRLW LGTFITAEDA ARAYDIKAVE FRGRKAKTNF  120
PLKEYIDADN STSPIVIVED DDQNGNEVAV ATDQDNNGEN SMDIGDDFWA TLEDDRLVKF  180
ITQDMSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2163123465ATERF1
3gcc_A6e-2163123465ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257KKKRRR
25258KKKRRRR
35358KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153552e-83AC215355.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0012A12, complete sequence.
GenBankAC2336432e-83AC233643.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankAC2336952e-83AC233695.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankHG9754412e-83HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755142e-83HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161294.11e-135PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLM0ZZQ01e-134M0ZZQ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000115371e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-27ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]