PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007988
Common NameLOC102581975, LOC107061965
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 255aa    MW: 28585.2 Da    PI: 7.4999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007988genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-182877255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +gr++AeIrdp +   + r +lg+f+taeeAa a++ a+++++g
  PGSC0003DMP400007988 28 RYRGVRRRP-WGRYAAEIRDPQT---KERKWLGTFDTAEEAACAYDCAARSMRG 77
                          59*******.**********943...4*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-292884IPR001471AP2/ERF domain
PROSITE profilePS5103221.972885IPR001471AP2/ERF domain
PfamPF008471.0E-112877IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-212885IPR016177DNA-binding domain
SMARTSM003805.8E-332891IPR001471AP2/ERF domain
CDDcd000188.87E-302884No hitNo description
PRINTSPR003678.7E-102940IPR001471AP2/ERF domain
PRINTSPR003678.7E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEDAMKPVQT RIFKRSVKLG RGGGGSMRYR GVRRRPWGRY AAEIRDPQTK ERKWLGTFDT  60
AEEAACAYDC AARSMRGVKA RTNFLYPPLT HDFLNVYTCT KTHNQFSLES SLPKSSNMFV  120
FHEIDVNISS KSSNINNLNN NPCDEQLLPL TGYHEISTTV DSGMEYFFPI LPCDNSGFLE  180
QALNGFFPKP LQENKSNVGH DIKLSNCPED LLNSTSESSS EPIHQQISGP MTFHYSDLLN  240
ILAANMKNSS TILL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-202084571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349659.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
RefseqXP_015167529.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLM0ZZM70.0M0ZZM7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000088300.0(Solanum tuberosum)
STRINGPGSC0003DMT4000114920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-15DORNROSCHEN-like
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]