PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400007575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23421.1 Da PI: 5.1847 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.5e-18 | 45 | 96 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ++GVr + + +Wv+eIr+p++ +k+++lg++ tae+Aa+a++ a+++l+ge PGSC0003DMP400007575 45 PVFRGVRKRN-NDKWVCEIREPTK---QKQIWLGTYPTAEMAARAHDVAALALKGE 96 579****888.8*********964...5*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-12 | 45 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.745 | 46 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 46 | 105 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 46 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-27 | 46 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.47E-28 | 47 | 105 | No hit | No description |
PRINTS | PR00367 | 1.4E-6 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MNDSSNSCSS NRTERSDEEN ILLVSSNKPK KRAAGRKKFK ETRHPVFRGV RKRNNDKWVC 60 EIREPTKQKQ IWLGTYPTAE MAARAHDVAA LALKGELATL NFADSAWRLP VPVSKDPKEL 120 RQAAARAAEA FEPVRDVAPQ ENNNVVVDCN MVVDENDNSN SCGIEEWVAN MEEESLFSPN 180 PCLFGSHFNW DDHVESDVEV SLWNYTI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400007575 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159272.1 | 1e-153 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9SGJ6 | 8e-56 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | M0ZYP1 | 1e-151 | M0ZYP1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010876 | 1e-152 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400007575 |
Publications ? help Back to Top | |||
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