PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400007305 | ||||||||
Common Name | LOC102606395 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28630 Da PI: 4.6918 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 6.9e-13 | 53 | 95 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI +L PGSC0003DMP400007305 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIEEL 95 57*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-17 | 45 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.228 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.06E-11 | 49 | 100 | No hit | No description |
SMART | SM00353 | 3.3E-14 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 52 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 53 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 6.87E-5 | 174 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MDNIGDEYKN YWETTMFLQS EELDSYFDEP ISSYYDSSSP DGSQSSMASK NIVSERNRRK 60 KLNERLFALR AVVPNISKMD KASIIKDAID YIEELHKQER RIRGEISELE SGRSSKKNST 120 DLEFEQDESF DSKPKRSRRF EMQYGYDSSG STTRSPPSSS PVDVLELRVS SMGEKTVVVS 180 LTCSKRTDTM VKVCEVFESL NIKIISANIT AFSGRLLKTA FIEADEEERD LLKLRIETAI 240 ASLNDPDSPM SS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400007305 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC253645 | 1e-123 | AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence. | |||
GenBank | HG975446 | 1e-123 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 1e-123 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344525.1 | 0.0 | PREDICTED: transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 8e-85 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | M0ZY40 | 0.0 | M0ZY40_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010463 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.1 | 5e-74 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400007305 |
Entrez Gene | 102606395 |
Publications ? help Back to Top | |||
---|---|---|---|
|