PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400007304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 170aa MW: 19509.4 Da PI: 4.6622 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 53 | 95 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI +L PGSC0003DMP400007304 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIEEL 95 57*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-17 | 45 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.228 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.74E-11 | 49 | 100 | No hit | No description |
SMART | SM00353 | 3.3E-14 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 52 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-11 | 53 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MDNIGDEYKN YWETTMFLQS EELDSYFDEP ISSYYDSSSP DGSQSSMASK NIVSERNRRK 60 KLNERLFALR AVVPNISKMD KASIIKDAID YIEELHKQER RIRGEISELE SGRSSKKNST 120 DLEFEQDESF DSKPKRSRRF EMQYGYDSSG STTRSPPSSS PVDVLEVIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 51 | 95 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400007304 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC253645 | 1e-130 | AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence. | |||
GenBank | HG975446 | 1e-130 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 1e-130 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344525.1 | 1e-117 | PREDICTED: transcription factor bHLH35 | ||||
Swissprot | Q700E3 | 4e-42 | BH027_ARATH; Transcription factor bHLH27 | ||||
TrEMBL | M0ZY39 | 1e-118 | M0ZY39_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010463 | 1e-117 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29930.2 | 2e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400007304 |
Publications ? help Back to Top | |||
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