PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400007294 | ||||||||
Common Name | LOC102604765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 306aa MW: 34005.5 Da PI: 8.6403 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.1 | 1.6e-30 | 62 | 178 | 3 | 115 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ +++s + + ++++ s++ PGSC0003DMP400007294 62 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKDEIDKLPPLQIPPPSLShffNMKDHHLDFVDTSET 150 78*************************************************************88888333445333333333333333 PP TCP 89 kaaksaa.kskksqksaasalnlakesr 115 k++ +++ +++++s++n+ ++s+ PGSC0003DMP400007294 151 GFGKEKWiATNDHDHQESSNHNFFQSSN 178 2233333355555555555566655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-27 | 63 | 163 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.44 | 63 | 121 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MNTKKQETGG GDTNNSKTSS RTTISTTTCT ATTPSSTCSR QSSSWAAGFK NPRIVRVSRT 60 FGGKDRHSKV CTVKGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL IDATKDEIDK 120 LPPLQIPPPS LSHFFNMKDH HLDFVDTSET GFGKEKWIAT NDHDHQESSN HNFFQSSNLG 180 MLNTFNNSTN NALISHNWEL PNSNLSLGPF GNYQDQYQQQ NMPFPSGSHH QHQQLYFCPS 240 SSTTSATTLS SLVPPYNSHF HQNSLTPTLQ LISVPVKSSF SLNDNNKGIN LQDHHQHNHK 300 EGSGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400007294 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-165 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354751.1 | 0.0 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | M0ZY34 | 0.0 | M0ZY34_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010453 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-44 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400007294 |
Entrez Gene | 102604765 |
Publications ? help Back to Top | |||
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