PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007237
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 280aa    MW: 31121.5 Da    PI: 10.1054
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007237genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.74.1e-38341963133
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                             kdrhski T++g+RdRR+Rls++ a++fF Lqd LGfdk+skt+eWLl+q+  ai el+                            
  PGSC0003DMP400007237  34 SNKDRHSKINTARGPRDRRMRLSLDAARKFFRLQDLLGFDKASKTVEWLLTQSDSAIEELVAVkgndaqvpqqtscntpttttgigaic 122
                           579***********************************************************9999****9999999999999998887 PP

                   TCP  66 .ssssasec.....eaesssssasnsssg..kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                            s+s +++c     +  ++ ss+++++++  k +k+++k+  ++++  ++  l kesr++arararert+ k++ +
  PGSC0003DMP400007237 123 aSNSISESCevisgT--DETSSNDKNKETtaKDEKEKKKKPVNTARRPAFEPLTKESRNQARARARERTKTKKMSQ 196
                           744444567777432..3333333222224455555555666666666689****************999987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-4534195IPR005333Transcription factor, TCP
PROSITE profilePS5136934.0243593IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.583175192IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEEGRGGNKG DDVVMSSRIS IISGRISKNN KRSSNKDRHS KINTARGPRD RRMRLSLDAA  60
RKFFRLQDLL GFDKASKTVE WLLTQSDSAI EELVAVKGND AQVPQQTSCN TPTTTTGIGA  120
ICASNSISES CEVISGTDET SSNDKNKETT AKDEKEKKKK PVNTARRPAF EPLTKESRNQ  180
ARARARERTK TKKMSQVGKS KSPAHDLNPS GSRRPANRTC EEPGTHEQHT FHHVDDSSFV  240
VNGNWNPFTI FTSHEQYAGI SNEHQLVTDL QFYGKLWES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5972280.0HM597228.1 Solanum tuberosum BRANCHED1B (BRC1B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275622.10.0TCP transcription factor BRC1b
TrEMBLM0ZXY00.0M0ZXY0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000103800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.16e-24TCP domain protein 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]