PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007178
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 204aa    MW: 22608.4 Da    PI: 6.2988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007178genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-1968117356
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                           ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++ + +++ge
  PGSC0003DMP400007178  68 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFITAEDAARAYDKKAIEFRGE 117
                           8*******.**********7.....337*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3167124IPR001471AP2/ERF domain
PROSITE profilePS5103223.31467124IPR001471AP2/ERF domain
SMARTSM003801.9E-3567130IPR001471AP2/ERF domain
PRINTSPR003671.3E-106879IPR001471AP2/ERF domain
CDDcd000181.00E-2968126No hitNo description
SuperFamilySSF541712.62E-2168125IPR016177DNA-binding domain
PfamPF008471.3E-1068117IPR001471AP2/ERF domain
PRINTSPR003671.3E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVSALRHVVS GAGDGDGLVN GEAAQLLLEV QNASGGSATS ANLMPRRSID VQLEKGKKRR  60
RRNTKKEFRG VRQRPWGKWA AEIRDPHKAQ RLWLGTFITA EDAARAYDKK AIEFRGEKAK  120
TNFPITEYAA AAVNDEINKL PTVVMEEERE LLVQVLHGVD VAVNGDQNYS SSSSSMQNGE  180
DDDFWETLED DGLVKRITQA MFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2166125464ATERF1
3gcc_A3e-2166125464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007178
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339943.21e-149PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLM0ZXT91e-148M0ZXT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102961e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-27ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]