PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007176
Common NameLOC102593941
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 303aa    MW: 33288.2 Da    PI: 5.594
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007176genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.7e-36101012102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+y++++d+ ++++isw+e g++fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+
  PGSC0003DMP400007176  10 FLLKTYQLVDDAVTDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQ 89 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           kell+ i+r+k+
  PGSC0003DMP400007176  90 KELLTAIRRRKT 101
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-37293IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-58699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-33699IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSQRTAPAPF LLKTYQLVDD AVTDDVISWN EIGTTFVVWK TAEFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTAIRRRK TVTSTPAGGK SVAAGTSASP  120
DNSGDDIGSS STSSPDSKNP GSVDTPGKSS QFTDLSDENE KLKKDNQMLS SELVQAKKQC  180
NELVAFLSQY VKVAPDMINR IMSQGTPSGS SLEELVKEVG GVKDLEEQGS YNDNDDKEDD  240
DEKGDTLKLF GVLLKEKKKK RGPDENIDTC GGRGKMMKTT VDYNGPWMKM SSAAGESSKV  300
CN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-24610417125Heat shock factor protein 1
5d5u_B1e-241010129131Heat shock factor protein 1
5d5v_B1e-241010129131Heat shock factor protein 1
5d5v_D1e-241010129131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007176
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX553470.0X55347.1 Tomato mRNA for heat stress transcription factor HSF24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339901.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223350.0HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLM0ZXT70.0M0ZXT7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-82heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]