PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007054
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 413aa    MW: 47896.1 Da    PI: 9.3318
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007054genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix379e-121473886
              trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                          m+e g+ r++k+C+ek+en+ k++k++k+g+++r  ++ +++++f+qle
  PGSC0003DMP400007054  1 MAELGYIRNAKKCREKFENIYKYHKRTKDGRSGR--QTGKNYRFFEQLE 47
                          7899****************************97..56668******97 PP
2trihelix96.13.2e-30277363186
              trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+k ev aLi++r++++ ++++  g++k+plWe++s  m++ g+ r++k+Ckekwen+nk+y+++ke++kkr +e+s+tcpyf+ql+
  PGSC0003DMP400007054 277 RWPKAEVEALIKLRTNVDLQYQDnnGSSKGPLWEDISCGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKKR-PEDSKTCPYFHQLD 363
                           8*******************9974478*********************************************8.99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.5E-7147No hitNo description
CDDcd122031.95E-21276343No hitNo description
PROSITE profilePS500906.632276336IPR017877Myb-like domain
PfamPF138378.9E-23276365No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAELGYIRNA KKCREKFENI YKYHKRTKDG RSGRQTGKNY RFFEQLELLD SQSLFSSPPL  60
NHSQINRMDT MPVPMPMPMT MIKPAASGCQ DFRMDLSRVR GFNPEFMSTS TSTTSSSGKE  120
SDGSMKKKRK LASYFERLMK EVLDKQEDLQ NKFLEAMEKC EKDRVARDEA WKMKEIARLK  180
KEQEALTHER AISAAKDAAV IAFLQKISEQ PIQLQLPTDL PQVSHRHTEE RESESMKTIG  240
NQENVMQQDN DKENIDKQEI DSAGENSNSF QTNSSSRWPK AEVEALIKLR TNVDLQYQDN  300
NGSSKGPLWE DISCGMKKLG YDRNAKRCKE KWENINKYYR RVKESQKKRP EDSKTCPYFH  360
QLDSIYQNKS KKQLPIIENP GSNMKAGEIL MQIINHHHQQ QQQQQASERT EC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351020.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLM0ZXI20.0M0ZXI2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000101120.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-93Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]