PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007053
Common NameLOC102597646
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 504aa    MW: 57413.5 Da    PI: 8.0594
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007053genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.77.4e-2955138186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+++e+laL+++r+em+ ++r+++lk plW+e+s+km+e g+ r++k+C+ek+en+ k++k++k+g+++r  ++ +++++f+qle
  PGSC0003DMP400007053  55 RWPHEETLALLKIRSEMDVAFRDSNLKSPLWDEISRKMAELGYIRNAKKCREKFENIYKYHKRTKDGRSGR--QTGKNYRFFEQLE 138
                           8********************************************************************97..56668******97 PP
2trihelix95.74.4e-30368454186
              trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+k ev aLi++r++++ ++++  g++k+plWe++s  m++ g+ r++k+Ckekwen+nk+y+++ke++kkr +e+s+tcpyf+ql+
  PGSC0003DMP400007053 368 RWPKAEVEALIKLRTNVDLQYQDnnGSSKGPLWEDISCGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKKR-PEDSKTCPYFHQLD 454
                           8*******************9974478*********************************************8.99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.02152114IPR001005SANT/Myb domain
PROSITE profilePS500907.06254112IPR017877Myb-like domain
PfamPF138371.7E-1954138No hitNo description
CDDcd122035.86E-2354119No hitNo description
SMARTSM007171.8365429IPR001005SANT/Myb domain
PROSITE profilePS500906.632367427IPR017877Myb-like domain
PfamPF138371.2E-22367456No hitNo description
CDDcd122031.85E-21367434No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MLESSVLLEN TATGVAVADG EAAELKNDGS GVGGGGGSVG GGSEEEDKNF SGGNRWPHEE  60
TLALLKIRSE MDVAFRDSNL KSPLWDEISR KMAELGYIRN AKKCREKFEN IYKYHKRTKD  120
GRSGRQTGKN YRFFEQLELL DSQSLFSSPP LNHSQINRMD TMPVPMPMPM TMIKPAASGC  180
QDFRMDLSRV RGFNPEFMST STSTTSSSGK ESDGSMKKKR KLASYFERLM KEVLDKQEDL  240
QNKFLEAMEK CEKDRVARDE AWKMKEIARL KKEQEALTHE RAISAAKDAA VIAFLQKISE  300
QPIQLQLPTD LPQVSHRHTE ERESESMKTI GNQENVMQQD NDKENIDKQE IDSAGENSNS  360
FQTNSSSRWP KAEVEALIKL RTNVDLQYQD NNGSSKGPLW EDISCGMKKL GYDRNAKRCK  420
EKWENINKYY RRVKESQKKR PEDSKTCPYF HQLDSIYQNK SKKQLPIIEN PGSNMKAGEI  480
LMQIINHHHQ QQQQQQASER TEC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12942SGVGGGGGSVGGGS
2216221KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351020.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLM0ZXI10.0M0ZXI1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000101120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-106Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]