PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400006960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 211aa MW: 24491.1 Da PI: 10.2425 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27.8 | 7.2e-09 | 7 | 137 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikev.d...iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 hP d+e+++ L k gk+++ ++++ +v d i + P+++ +++k++++++ ++ +++++ + +++ + g+Wk+t k k++ PGSC0003DMP400006960 7 HPMDKEMMNS-LVKYGIGKPFPRKHTVMDVdDvygIRVFSPSQILESTKGTNNNTRLLITFQNTENCKVFASK-EAPGFWKSTPKRKSI 93 8******966.66666677755555444442422266789***975555544444333333333333334444.356************ PP NAM 93 lskkgelvglkktLvfy........kgrapkgektdWvmheyrl 128 ++++++++g k+ +y ++++++ ++++W + ey l PGSC0003DMP400006960 94 FDANKRHIGNIKISWYYyynvddgrDKSSSRLRQSEWQIREYYL 137 ***9999999888777768888554445556679********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 10.81 | 1 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-9 | 7 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGKSNSHPMD KEMMNSLVKY GIGKPFPRKH TVMDVDDVYG IRVFSPSQIL ESTKGTNNNT 60 RLLITFQNTE NCKVFASKEA PGFWKSTPKR KSIFDANKRH IGNIKISWYY YYNVDDGRDK 120 SSSRLRQSEW QIREYYLTSK YLPQSKVERK NVLLTMMIKT KAANNNNNDK SDEKMQRIVL 180 DKQDIMQSLQ LPSTLVIEQQ IRASLRFCLC * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400006960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027774642.1 | 1e-117 | uncharacterized protein LOC114078274 | ||||
TrEMBL | M0ZX94 | 1e-156 | M0ZX94_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400009985 | 1e-157 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14078 | 5 | 10 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400006960 |
Publications ? help Back to Top | |||
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