PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006689
Common NameLOC102601100
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 407aa    MW: 44073.6 Da    PI: 7.8763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006689genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-052973351255
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  PGSC0003DMP400006689 297 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 335
                           7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-11295347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-5295339No hitNo description
Gene3DG3DSA:4.10.280.104.1E-9299342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEPANLHQQY QYHQLQFQDQ FPLIGISPNS SSSSNNSCYG GVSTTNTWTP CTTTTTTILN  60
SHGSGLINSY SSGDIINTTN SSSSDPLNLV NSMSSTTQDL GFHQWANNNI KHENSYPKFT  120
QMLTSPSSIE EGGELSDMNA KLLLGTLSNT GLQLYHGDNN NNNNNNNLLY SSNSSSISTN  180
RGRFSQIYPT INVSNLNINH QANSCSSLDM NLQPLDLINS TRYGGSFSQT YGLTTNHFQH  240
SSSESPVNSS TSISAFSNGM PEAKRTSNTL ETNKGPQNAP KKSRVDSRAS CPPFKVRKEK  300
LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY IKFLQNQVET LSVPYMKSSR SKASRSLHGG  360
GGEMNNEEMK RDLRSRGLCL VPLTCLTYVT EGGGGVWPPP NFTGGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341970.10.0PREDICTED: transcription factor bHLH110
TrEMBLM0ZWL20.0M0ZWL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000096030.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-60bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]